References
Harvested from the source files themselves, not maintained by hand — so this list cannot drift away from what the code actually cites.
Every constant in this model is either traceable to one of the sources below, or is explicitly labelled as inferred or unverified on the calibration table. The distinction is the point: a model that cites a source for every number, including the numbers that do not have one, is checkable.
Indexed identifiers
| Identifier | Appears in |
|---|---|
PMID 1167307 | physics_patient.py |
PMID 20143237 | physics_patient.py |
PMID 26508542 | physics_patient.py, physics_sim.py, test_constants_literature.py |
PMID 7797810 | physics_sim.py |
PMID 8039632 | physics_patient.py |
PMID 8105960 | physics_sim.py |
PMID 8264138 | physics_sim.py |
PMID 9734733 | physics_patient.py, physics_sim.py |
Cited works, as written in the source
| Citation | Appears in |
|---|---|
| Abs and naNet ADDED 2026-07-20, same reasoning | test_published_regression.py |
| ACTUATOR ENVELOPES (inventor 2026-08-15: "no changes ever happen instantaneously, they take t | physics_sim.py |
| ADDED 2026-07-21 (adversarial review): | test_blindness_structural.py |
| ADDED 2026-07-21; caught via keys/iter | test_blindness_structural.py |
| Added 2026-07-22 after an | test_blindness_structural.py |
| Added 2026-08-02 | physics_sim.py |
| Added 2026-08-06 | physics_core.py |
| Added 2026-08-18 after an adversarial review defeated checks 1-5 with | test_blindness_structural.py |
| ADDED 2026-08-21 | test_constants_literature.py |
| Added 2026-08-22 on the inventor's standing reporting rule: every run | physics_sim.py |
| Adding one here was a bug I introduced on 2026-08-02 and | physics_sim.py |
| Adversarial review 2026-08-09; the hypotheses of a mid-step refill and of a stale | physics_sim.py |
| Albumin charge from Figge J, Mydosh T, Fencl V, J Lab Clin Med 1992;120:713 — the standard | physics_core.py |
| Am Diet Assoc 1995;95(7):791-7, PMID 7797810; Frassetto LA et al | physics_patient.py |
| APPLY THE PRODUCT OPERATING POINT BEFORE IMPORTING THE ENGINE (fixed 2026-08-22) | test_published_regression.py |
| Bernardo 2012 (PDI 32:537-44) measured the corrected free-water-transport | test_constants_literature.py |
| Bernardo 2012 FWT 0 | test_constants_literature.py |
| Bernardo 2012 measured free-water transport at 0 | physics_core.py |
| Calcium and Magnesium added 2026-08-02 | physics_core.py |
| CALCIUM, MAGNESIUM AND PHOSPHATE ADDED 2026-08-21 | physics_patient.py |
| CALIBRATION (corrected 2026-08-07): the slowest mode of a diffusing column | physics_sim.py |
| CASCADE form (fixed 2026-08-07) | physics_sim.py |
| CAVEAT, MEASURED AND IMPORTANT (physiology audit 2026-08-22): these three CANNOT TRIP inside a | test_constants_literature.py |
| CELL (tissue/ICF) + CAVITY (layers/peritoneal) tokens added 2026-07-22: the claim covers "serum/ | test_blindness_structural.py |
| Chloride and Sulfate, 2005, ch | physics_patient.py |
| CIRCUIT SELECTION BY ENVIRONMENT (added 2026-08-13) | physics_sim.py |
| CITATION PARTIALLY VERIFIED 2026-08-22 — the reference is REAL and APPOSITE, the NUMBERS are | test_constants_literature.py |
| Cl 97 -> 87, ELECTRONEUTRAL (fixed 2026-08-20) | physics_sim.py |
| CM & Rippe B, Kidney Int Rep 2017;2(6):1128-38 | test_constants_literature.py |
| CM & Rippe B, Kidney Int Rep 2017;2(6):1128-38, PMC5733752, Table 1, "Transperitoneal | physics_core.py |
| COMPARISONS ARE INVERTED SO NaN RAISES (fixed 2026-08-18, adversarial review) | physics_sim.py |
| CONCENTRATIONS READ BEFORE THE TRANSFER (fixed 2026-08-20, adversarial | physics_sim.py |
| Cond, q x dCond), added 2026-08-22 — both built from | test_blindness_structural.py |
| CONJUGATE ANION is RETAINED (added 2026-08-05) | physics_sim.py |
| CORRECTED 2026-08-07 | physics_sim.py |
| DIETARY CHLORIDE (added 2026-08-02) | physics_sim.py |
| DIETARY PHOSPHATE (added 2026-08-03), delivered in MEAL BOLUSES not continuously | physics_sim.py |
| DO NOT SILENTLY DISCARD AN UNSATISFIABLE DRAIN (added 2026-08-07, adversary finding) | physics_sim.py |
| Douma 1995 (nitrate, 180 Da | test_constants_literature.py |
| DRAIN FROM THE BOTTOM OF THE COLUMN, cascading upward (fixed 2026-08-07) | physics_sim.py |
| Durand 1993 (PMID 8105960): 13 cmH2O at 2 | physics_sim.py |
| Durand 1993 anchor) | physics_sim.py |
| Durand 1994 (PMID 7999866) | physics_sim.py |
| Durand 1994 (PMID 7999866): linear in volume from | physics_sim.py |
| Durand 1994, linear to 5 L) | physics_sim.py |
| Durand PY, Chanliau J, Gamberoni J, Hestin D, Kessler M, Adv Perit Dial 1993;9:46-8 | physics_sim.py |
| EFSA J 2019;17(9):5779) | physics_patient.py |
| ELECTRONEUTRAL AT t=0 (fixed 2026-08-22, S19/P5) | physics_sim.py |
| Flessner, Am J Physiol 1991;261:H1040] | physics_core.py |
| Found 2026-08-07 during pretraining, where a | physics_sim.py |
| Found 2026-08-13 by attribution: it is 14 | physics_sim.py |
| Found by adversarial review 2026-08-01; pinned by | physics_sim.py |
| Found by adversarial review, 2026-08-09 | physics_sim.py |
| Found by advisory review 2026-08-02; pinned by test_icf_pool_sane | physics_sim.py |
| GLOBULIN added 2026-08-09 | physics_core.py |
| GLOBULIN REPLACEMENT (added 2026-08-09 with the globulin species itself) | physics_sim.py |
| Glu and cumUF ADDED 2026-07-20 | test_published_regression.py |
| GLUCOSE MTAC BAND CORRECTED 2026-08-22 | test_constants_literature.py |
| Hashimoto & Kamijo, Life 2025, PMC11856993, Table 1); this engine had | physics_core.py |
| Helman 2024 PMC10914194 independently puts free-water transport at a fi | test_constants_literature.py |
| Helman J, Wahlgren H, Andersson L, Morelle J, Oberg CM, 2024 (PMC10914194) state a fixed | physics_core.py |
| HEPATIC ALBUMIN SYNTHESIS (added 2026-08-02) | physics_sim.py |
| HISTORICAL NOTE (2026-08-15 → superseded 2026-08-22) | test_published_regression.py |
| HISTORY OF THIS DOCSTRING, since it is a lesson about reviewing: on 2026-08-16 I annotated this | physics_core.py |
| HOLDING RESERVOIR (added 2026-08-13) | physics_sim.py |
| HONEST PROVENANCE (annotated 2026-08-22, literature audit finding #4) | physics_sim.py |
| HONEST PROVENANCE (corrected 2026-08-02 after adversarial review): this is NOT | physics_sim.py |
| ICODEXTRIN USES THE NUMBER-AVERAGE MW (fixed 2026-08-22, literature audit finding #8) | physics_core.py |
| Imholz 1993 1 | test_constants_literature.py |
| Imholz 1993, PMID 8264138) — this one RAISES net UF; | test_published_regression.py |
| INTER-LAYER SOLUTE DIFFUSION (added 2026-08-07) | physics_sim.py |
| INTRAPERITONEAL PRESSURE, recalibrated to measurement 2026-08-09 | physics_sim.py |
| It was a plain dict until 2026-08-05; that made conservation depend on every caller | physics_sim.py |
| ITERATED TO CONVERGENCE (fixed again 2026-08-07, adversary finding) | physics_sim.py |
| Jv = Kf_t·Δπ_crys·dt [Starling 1896; Levick & Michel 2010] | physics_core.py |
| K-clearance fix 2026-07-05 | physics_patient.py |
| KDOQI 2020 recommends 1 | physics_patient.py |
| KDOQI, NOT REGRESSION-PRESERVING (changed 2026-08-21) | physics_patient.py |
| Kf RECRUITS WITH THE SAME AREA (fixed 2026-08-22, literature audit finding #2) | physics_sim.py |
| Landis EM & Pappenheimer JR, Handbook of Physiology, Sect 2 Vol II, 1963, p | test_oncotic_landis.py |
| Lives HERE, in the shared base, because from 2026-08-22 the | physics_core.py |
| LpS not located in the 2026-07-18 fetch (the hit was Zakaria & Rippe 1993, a RAT " | test_constants_literature.py |
| MEASURED (Himathongkam 1975), documentation only | physics_patient.py |
| Measured 2026-08-04: at 25% serum iCa ran 1 | physics_patient.py |
| Measured over 2000 steps: worst error 132 | physics_sim.py |
| Monovalent salt rejection raised to the COMMERCIALLY-AVAILABLE BEST (2026-08-24, inventor: | physics_core.py |
| Monquil 1995 1 | test_constants_literature.py |
| MTAC_s·(C_serum − C_layer)·dt [Smit 2003; Rippe] | physics_core.py |
| Mutation-tested 2026-07-19 (fatal_mutation | test_constants_literature.py |
| Mutation-tested 2026-07-19/2026-07-21 with six leak vectors; checks 1-4 caught o | test_blindness_structural.py |
| NET ENDOGENOUS ACID PRODUCTION (added 2026-08-02) | physics_sim.py |
| Net endogenous acid production was implemented on 2026-08-02 and | test_constants_literature.py |
| NON-OSMOTIC SODIUM STORE (skin + skeletal-muscle GAG-bound Na), added 2026-08-24 (S19/P2) -- | physics_sim.py |
| NON-THIRST WATER INPUTS (added 2026-08-22, physiology audit finding #4) | physics_patient.py |
| NOT VERIFIED against a source: it could not be obtained in the 2026-07-19 session | physics_core.py |
| Oberg & Rippe 2017 (PMC5733752 T1), human: PS for Na+ and anions = 4 | test_constants_literature.py |
| OPEN QUESTION, FLAGGED AND DELIBERATELY NOT CHANGED (adversarial review 2026-08-19) | physics_sim.py |
| OSMOTIC WALL (2026-08-13): the commanded recovery is only achievable if the | physics_sim.py |
| OVOID cavity geometry (added 2026-08-07) | physics_sim.py |
| PD patients (Öberg CM & Rippe B, Kidney Int Rep 2017;2(6):1128-38, | test_oncotic_landis.py |
| PECLET COUPLING (added 2026-08-22, literature audit finding #1) | physics_sim.py |
| PER-MINUTE TIME CONSTANT, NOT PER-STEP (fixed 2026-08-20, adversarial review) | physics_sim.py |
| Perit Dial Int 2004;24(1):10-27, PMID 15104333 — a HUMAN CAPD three-pore paper, | test_constants_literature.py |
| PHYSIOLOGIC CONSTANTS vs PUBLISHED VALUES (sources fetched from PubMed 2026-07-18)\n") | test_constants_literature.py |
| PIN UPDATED 2026-08-20 — deliberately, after review, not to make a red test | test_blindness_structural.py |
| PIN UPDATED 2026-08-22 — `flow_for_clearance` added, deliberately and after | test_blindness_structural.py |
| PTH-LIKE MINERAL HOMEOSTASIS (added 2026-09-06) | physics_sim.py |
| PURGE / BLEED LINE (added 2026-08-13, L/day; 0 = absent = prior circuit exactly) | physics_sim.py |
| RATE, NOT A PER-STEP FRACTION (fixed 2026-08-18, adversarial review) | physics_sim.py |
| RE-BASELINED 2026-08-08 21:45 MST — A DELIBERATE RE-BASELINE, ON THE INVENTOR | test_published_regression.py |
| RE-BASELINED 2026-08-09 (Landis-Pappenheimer + globulins) ======== | test_published_regression.py |
| RE-BASELINED 2026-08-09 (paired sodium + base prescription) ============== | test_published_regression.py |
| RE-BASELINED 2026-08-13 (RO recovery bounded by the osmotic wall) =========== | test_published_regression.py |
| RE-DERIVE CHLORIDE ONLY IF SODIUM ACTUALLY MOVED (fixed 2026-08-20, adversarial | physics_sim.py |
| RE-PINNED 2026-08-22 (KDOQI protein + Peclet coupling + literature correct | test_published_regression.py |
| RE-PINNED 2026-08-22 TO THE PET-CALIBRATED MEMBRANE | test_published_regression.py |
| RE-PINNED 2026-08-27 (creatinine added — S22 #1, D/P creatinine) | test_published_regression.py |
| RE-PINNED AGAIN 2026-08-22 (acid-load + electroneutrality corrections) | test_published_regression.py |
| Remer & Manz 1995 PMID 7797810 and Frassetto 1998 PMID 9734733 give 0 | test_constants_literature.py |
| REMOVED 2026-08-07) A "WELL-MIXED cavity" homogenizer used to sit here a | physics_sim.py |
| REMOVED 2026-08-18 (adversarial review) | physics_sim.py |
| Rep 2017;2(6):1128-38 (PMC5733752, Table 1) give a DIRECT human valu | physics_sim.py |
| RESOLUTION LIMIT (documented 2026-08-07 after an adversarial review) | physics_geometry.py |
| RETAINED ACID ANION (added 2026-08-02 after adversarial review): neap_mmol titrates bicarbo | physics_patient.py |
| Rewritten 2026-08-07 after an adversarial review measured the FLOOR slab's | physics_geometry.py |
| Rippe 2001 (PMID 11687943) states it exactly that way: | physics_core.py |
| Rippe 2001 ~1", | test_constants_literature.py |
| Rippe 2004 (Perit Dial Int 24(1):10-27, PMID 15104333) CONFIRMED as a | test_constants_literature.py |
| Rippe 2017 (PMC5733752, Table 1) list "Peritoneal lymph flow (L) (ml/m | physics_sim.py |
| Rippe B, Kidney Int Rep 2017;2(6):1128-38 (PMC5733752, Table 1), human PD patients of av | physics_core.py |
| Rippe B, Rosengren BI, Venturoli D, Microcirculation 2001;8(5):303-20 (PMID 11687943) puts | physics_sim.py |
| Rippe B, Venturoli D, Simonsen O, de Arteaga J, Perit Dial Int 2004;24(1):10-27, PMID 15104333) | physics_core.py |
| RO PRESSURE AS A COMMANDED ACTUATOR (2026-08-22) | physics_sim.py |
| SEARCHED AND NOT FOUND 2026-07-19 — do not repeat these dead ends: PubMed returns a CFD | test_constants_literature.py |
| Selgas 2005: 22 | test_constants_literature.py |
| SERIAL SORBENT POLISHING COLUMN (regen='ro+sorbent', added 2026-08-12) | physics_sim.py |
| SKELETAL (bone) reservoir for the mineral species, added 2026-08-04 ----------------------- | physics_sim.py |
| SLEW IS NOW ON — THE PIN MEASURES THE REAL DEVICE (changed 2026-08-22, inventor's republish | test_published_regression.py |
| SODIUM RATE OF CHANGE (added 2026-08-24) | physics_patient.py |
| SODIUM RATE-OF-CHANGE FATAL LIMITS (added 2026-08-24, literature audit ranked fix #2) | physics_patient.py |
| Sodium': 1960 | physics_core.py |
| Sodium'] = 0 — measured 1960 mmol), so 100% of every retained mmol expanded ECF | physics_sim.py |
| Sodium, Chloride and Sulfate, 2005, ch | physics_sim.py |
| SODIUM: band corrected 2026-08-09 to the DIRECT HUMAN MEASUREMENT | test_constants_literature.py |
| SOURCE: INFERRED/UNVERIFIED (colonic K secretion, ESRD-upregulated; Sorensen 2010) | physics_patient.py |
| Sources were fetched from PubMed on 2026-07-18 | test_constants_literature.py |
| TEMPERATURE AND ACTIVITY, STATED PROPERLY (corrected 2026-08-22, literature audit finding #9) | physics_core.py |
| THE CHARGE NUMBERS BELOW WERE RE-DERIVED FROM THESE COEFFICIENTS ON 2026-08-09 and are no longer | physics_core.py |
| The engine's PHYSICS moved twice on 2026-08-09 and these pins move with it | test_published_regression.py |
| THE GLUCOSE BOOKING MOVED DOWN into the two branches below (fixed 2026-08-18, | physics_sim.py |
| THE GLUCOSE ECONOMY (corrected 2026-08-07 — the identity stated here before was wrong): | physics_sim.py |
| THE SIZE, CORRECTED 2026-08-20 — the earlier note here said "~9% pessimistic | physics_sim.py |
| Three-pore coefficients (Rippe PDI 2004;24:S5 — cited in physics_core, not re-fetched):") | test_constants_literature.py |
| TOTAL PERITONEAL FLUID ABSORPTION — renamed 2026-08-09; it is NOT lymph flow | physics_sim.py |
| TRANSCELLULAR POTASSIUM BUFFER (added 2026-08-02) | physics_sim.py |
| UPDATED 2026-08-09 | test_engine_equivalence.py |
| VALIDATED, NOT COERCED (2026-08-18, adversarial review) | physics_sim.py |
| Vd was hiding until 2026-08-02 | physics_sim.py |
| Weight-scaled 2026-08-02 | physics_sim.py |
| Weight-scaled 2026-08-02: unscaled, the 45 kg | physics_sim.py |
| WEIGHT-SCALED 2026-08-06 | physics_patient.py |
| WETTED-VOLUME GUARD (added 2026-08-08) | physics_sim.py |
| WHERE THE DISCARDED WATER ACTUALLY GOES (added 2026-08-13) | physics_sim.py |
| WHICH LUMEN DOES THE FILL/DRAIN USE? (added 2026-08-08) | physics_sim.py |
| WHY IT MATTERED MORE THAN ITS SIZE: PD20_DT is a live knob and the 2026-08-18 tick sweep | physics_sim.py |
| WHY THIS WAS NEEDED (2026-08-13) | physics_sim.py |
| Wijmans & Baker, J Membr Sci 1995;107:1] | physics_core.py |
| Zeroed 2026-08-02: the tissue concentrations were computed into an unus | physics_sim.py |
8 indexed identifiers and 168 citation strings, extracted automatically from 10 published files.